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Table 1 P/LP variants. cDNA and Protein changes are named according to HGVS nomenclature

From: Implementation of massive sequencing in the genetic diagnosis of hereditary cancer syndromes: diagnostic performance in the Hereditary Cancer Programme of the Valencia Community (FamCan-NGS)

ID

HCS

Gene

cDNA change

Protein change

Variant Type

Consequence

Variant Classific.

S14

HBOC

RAD51D

c.958C > T

p.(Arg320Ter)

SNV

Nonsense

LP

S22

CRC

APC

c.2805C > A

(p.Tyr935Ter)

SNV

Nonsense

P

MUTYH

c.1187G > A

(p.Gly396Asp)

SNV

Missense

P

TP53

c.845G > A

(p.Arg282Gln)

SNV

Missense

P

S36

HBOC

XPC

c.1001C > A

p.(Pro334His)

SNV

Missense

P

S38

LS

MSH2

c.792G > C

p.(Gln264His)

SNV

Missense a

LP

S39

LS

MUTYH

c.536A > G

p.(Tyr179Cys)

SNV

Missense

P

S51

FAP

MUTYH

c.1187G > A

p.(Gly396Asp)

SNV

Missense a

P

MUTYH

c.1437_1439delGGA

p.(Glu480del)

del

Missense

P

S58

HBOC

MUTYH

c.1101dupC

p.(Arg368GlnfsTer164)

dup

Frameshift

P

S63

HBOC

ATM

c.8249_8252delTAAC

p.(Thr2751SerfsTer54)

del

Frameshift a

LP

MUTYH

c.1101dupC

p.(Arg368GlnfsTer164)

dup

Frameshift

P

S69

HBOC

PALB2

c.2964delA

p.(Val989Ter)

del

Frameshift

P

S70

HBOC

BRCA1

c.115 T > C

p.(Cys39Arg)

SNV

Missense

P

S77

HBOC

BRCA1

c.3770_3771delAG

p.(Glu1257GlyfsTer9)

del

Frameshift

P

S84

LS

BRIP1

c.2990_2993delCAAA

p.(Thr997ArgfsTer61)

del

Frameshift

LP

S87

LS

TP53

c.638G > A

p.(Arg213Gln)

SNV

Missense

P

S89

LS

BRCA2

c.5980C > T

p.(Gln1994Ter)

SNV

Nonsense

P

S91

HBOC

BRCA2

c.9025_9029delTATCA

p.(Tyr3009SerfsTer7)

del

Frameshift

P

  1. Reference sequence: RAD51D: NM_001142571.1; TP53: NM_000546.5; APC: NM_000038.5; MUTYH: NM_001128425.1; XPC: NM_004628.4; MSH2: NM_000251.2; ATM: NM_000051.3; PALB2: NM_024675.3; BRCA1: NM_007300.3; BRIP1: NM_032043.2; BRCA2: NM_032043.3
  2. aRemarked missense variants which affect splice site regions and novel frameshift variant